| 1 | | Swindon Town | 40 | 22 (2 pen) |
| 2 | | Grimsby Town | 48 | 19 (2 pen) |
| 3 | | Milton Keynes Dons | 36 | 16 (2 pen) |
| 4 | | Bromley | 35 | 16 (4 pen) |
| 5 | | Walsall | 40 | 15 |
| 6 | | Notts County | 34 | 15 |
| 8 | | Grimsby Town | 44 | 14 |
| 9 | | Notts County | 42 | 14 (2 pen) |
| 10 | | Barnet | 34 | 13 |
| 11 | | Bromley | 46 | 13 |
| 12 | | Colchester United | 39 | 13 (4 pen) |
| 13 | | Chesterfield | 47 | 12 |
| 14 | | Milton Keynes Dons | 44 | 12 |
| 16 | | Colchester United | 45 | 11 |
| 17 | | Colchester United | 33 | 11 |
| 18 | | Crewe Alexandra | 40 | 11 (1 pen) |
| 19 | | Bristol Rovers | 38 | 11 (1 pen) |
| 20 | | Cambridge United | 36 | 11 (4 pen) |
| 21 | | Bristol Rovers | 43 | 10 |
| 22 | | Tranmere Rovers | 41 | 10 |
| 23 | | Fleetwood Town | 46 | 10 (1 pen) |
| 24 | | Salford City | 38 | 10 (1 pen) |
| 25 | | Crewe Alexandra | 31 | 10 (2 pen) |
| 26 | | Grimsby Town | 42 | 10 (3 pen) |
| 27 | | Cambridge United | 43 | 9 |
| 28 | | Barrow | 31 | 9 (1 pen) |
| 29 | | Notts County | 40 | 9 (3 pen) |
| 30 | | Milton Keynes Dons | 25 | 9 (4 pen) |
| 31 | | Chesterfield | 46 | 8 |
| 32 | | Oldham Athletic | 41 | 8 |
| 34 | | Chesterfield | 40 | 8 |
| 35 | | Bromley | 34 | 8 |
| 36 | | Swindon Town | 41 | 8 (1 pen) |
| 37 | | Crawley Town | 32 | 8 (2 pen) |
| 38 | | Barnet | 40 | 8 (3 pen) |
| 39 | | Bromley | 40 | 7 |
| 40 | | Oldham Athletic | 40 | 7 |
| 41 | | Colchester United | 22 | 7 |
| 42 | | Milton Keynes Dons | 36 | 7 |
| 43 | | Tranmere Rovers | 36 | 7 |
| 44 | | Notts County | 34 | 7 |
| 45 | | Cambridge United | 30 | 7 |
| 46 | | Cheltenham Town | 29 | 7 |
| 47 | | Grimsby Town | 24 | 7 |
| 48 | | Cambridge United | 40 | 7 |
| 49 | | Barrow | 31 | 7 |
| 50 | | Walsall | 39 | 7 |
| 51 | | Barnet | 46 | 7 |
| 52 | | Crewe Alexandra | 46 | 7 (1 pen) |
| 53 | | Colchester United | 45 | 7 (1 pen) |
| 54 | | Gillingham | 41 | 7 (1 pen) |
| 55 | | Oldham Athletic | 16 | 7 (1 pen) |
| 56 | | Cambridge United | 39 | 6 |
| 57 | | Accrington Stanley | 32 | 6 |
| 58 | | Chesterfield | 48 | 6 |
| 59 | | Salford City | 31 | 6 |
| 60 | | Swindon Town | 28 | 6 |
| 61 | | Milton Keynes Dons | 41 | 6 |
| 62 | | Cambridge United | 46 | 6 |
| 63 | | Bristol Rovers | 19 | 6 |
| 64 | | Fleetwood Town | 42 | 6 |
| 65 | | Newport County | 30 | 6 |
| 66 | | Walsall | 42 | 6 |
| 67 | | Crewe Alexandra | 40 | 6 |
| 68 | | Fleetwood Town | 42 | 6 |
| 69 | | Salford City | 39 | 6 |
| 70 | | Milton Keynes Dons | 29 | 6 (1 pen) |
| 71 | | Oldham Athletic | 19 | 6 (1 pen) |
| 72 | | Cheltenham Town | 39 | 6 (1 pen) |
| 73 | | Chesterfield | 34 | 5 |
| 74 | | Barrow | 34 | 5 |
| 75 | | Salford City | 28 | 5 |
| 76 | | Tranmere Rovers | 46 | 5 |
| 77 | | Harrogate Town | 30 | 5 |
| 78 | | Accrington Stanley | 32 | 5 |
| 79 | | Walsall | 28 | 5 |
| 80 | | Chesterfield | 33 | 5 |
| 81 | | Salford City | 41 | 5 |
| 82 | | Newport County | 35 | 5 |
| 83 | | Barnet | 43 | 5 |
| 84 | | Swindon Town | 22 | 5 |
| 85 | | Accrington Stanley | 38 | 5 |
| 86 | | Harrogate Town | 28 | 5 |
| 87 | | Newport County | 40 | 5 |
| 88 | | Oldham Athletic | 26 | 5 |
| 89 | | Accrington Stanley | 16 | 5 (1 pen) |
| 90 | | Accrington Stanley | 33 | 5 (1 pen) |
| 91 | | Gillingham | 20 | 5 (1 pen) |
| 92 | | Tranmere Rovers | 37 | 5 (2 pen) |
| 93 | | Gillingham | 33 | 5 (4 pen) |
| 94 | | Crawley Town | 23 | 4 |
| 95 | | Grimsby Town | 42 | 4 |
| 96 | | Bristol Rovers | 24 | 4 |
| 97 | | Swindon Town | 27 | 4 |
| 98 | | Colchester United | 28 | 4 |
| 99 | | Barnet | 46 | 4 |
| 100 | | Crewe Alexandra | 45 | 4 |
| 101 | | Shrewsbury Town | 43 | 4 |
| 102 | | Milton Keynes Dons | 21 | 4 |
| 103 | | Crawley Town | 36 | 4 |